From: "Saved by Windows Internet Explorer 7" Subject: Concise Summary Report (../data/20080627/Ftgernsmh.dat) Date: Fri, 27 Jun 2008 17:19:01 -0400 MIME-Version: 1.0 Content-Type: multipart/related; type="text/html"; boundary="----=_NextPart_000_004F_01C8D879.E4867A80" X-MimeOLE: Produced By Microsoft MimeOLE V6.0.6000.16545 This is a multi-part message in MIME format. ------=_NextPart_000_004F_01C8D879.E4867A80 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: quoted-printable Content-Location: http://www.matrixscience.com/cgi/master_results.pl?file=../data/20080627/Ftgernsmh.dat =EF=BB=BF Concise Summary Report = (../data/20080627/Ftgernsmh.dat)

Mascot Search=20 Results

User    =
        : daishaojun
Email           : sdai@ufl.edu
Search title    : 
Database        : NCBInr 20080616 (6589360 sequences; 2253133281 =
residues)
Taxonomy        : Viridiplantae (Green Plants) (483498 sequences)
Timestamp       : 27 Jun 2008 at 21:18:27 GMT
Top Score       : 154 for gi|115456623, =
Os03g0851100 [Oryza sativa (japonica cultivar-group)]

Probability Based Mowse Score

Protein score is -10*Log(P), where = P is=20 the probability that the observed match is a random event.
Protein = scores=20 greater than 69 are significant (p<0.05).

3D"Score =20

= =20 =20 = =20 =20 =20 =20 =20 =20 =20 =20 = =20 =20 =20 =20 =20 = = =20

=20

1.     gi|115456623    Mass: = ;48564    Score: 154    Expect:&n= bsp;1.9e-10  Queries=20 matched: 14

Os03g0851100 [Oryza sativa (japonica=20 cultivar-group)]

       gi|108712132    Mass: = ;33978    Score: 86     Expect:<= /B> 0.0012  Queries=20 matched: 9

Elongation factor Tu, mitochondrial precursor, = putative,=20 expressed [Oryza sativa (japonica=20 cultivar-group)]

       gi|11181616    Mass: = 48746    Score: 72     Expect:<= /B> 0.031  Queries=20 matched: 8

translational elongation factor EF-TuM [Zea=20 mays]

       gi|147784261    Mass: = ;49185    Score: 60   &nbs= p; Expect: 0.48  Queries=20 matched: 7

hypothetical protein [Vitis=20 vinifera]

       gi|157347885    Mass: = ;49198    Score: 60   &nbs= p; Expect: 0.48  Queries=20 matched: 7

unnamed protein product [Vitis=20 vinifera]

       gi|125554398    Mass: = ;38251    Score: 51   &nbs= p; Expect: 3.5  Queries=20 matched: 7

hypothetical protein OsI_021236 [Oryza sativa (indica = cultivar-group)]

       gi|21326503    Mass: = 41755    Score: 45    = ; Expect: 16  Queries=20 matched: 6

Putative retrotransposable elements TNP2 [Oryza = sativa=20 (japonica cultivar-group)]

       gi|22953952    Mass: = 26240    Score: 41    = ; Expect: 41  Queries=20 matched: 5

Putative retrotransposable elements TNP2 [Oryza = sativa=20 (japonica cultivar-group)]

       gi|20270076    Mass: = 18954    Score: 40    = ; Expect: 44  Queries=20 matched: 4

Putative transposase [Oryza sativa (japonica=20 cultivar-group)]

       gi|125596348    Mass: = ;56260    Score: 40   &nbs= p; Expect: 47  Queries=20 matched: 7

hypothetical protein OsJ_019611 [Oryza sativa = (japonica=20 cultivar-group)]

       gi|59381151    Mass: = 7408     Score: 39   =   Expect: 64  Queries=20 matched: 3

trypsin inhibitor [Lens = culinaris]

       gi|12330508    Mass: = 21820    Score: 38    = ; Expect: 77  Queries=20 matched: 4

ribosomal protein 4 [Rhachithecium=20 papillosum]

       gi|168037551    Mass: = ;14717    Score: 38   &nbs= p; Expect: 78  Queries=20 matched: 4

predicted protein [Physcomitrella patens subsp.=20 patens]

       gi|22854701    Mass: = 21490    Score: 38    = ; Expect: 82  Queries=20 matched: 4

small ribosomal protein 4 [Dicranoloma=20 menziesii]

`2.`	`gi\|115481204 Mass: = ;108134 Score: 53 &nb= sp;Expect: 2.5 Queries=20 matched: 9`
	`Os10g0157900 [Oryza sativa (japonica=20 cultivar-group)]`

Search Parameters

Type of search         : Peptide Mass =
Fingerprint
Enzyme                 : Trypsin
Fixed modifications    : Carbamidomethyl (C)
Variable modifications : Oxidation (M)
Mass values            : Monoisotopic
Protein Mass           : Unrestricted
Peptide Mass Tolerance : =C2=B1 0.3 Da
Peptide Charge State   : 1+
Max Missed Cleavages   : 1
Number of queries      : 21

Mascot: http://www.matrixscience.com/ =

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browser_NS6 =3D 0; =0A= var browser_NS7 =3D 0; =0A= var browser_OP5 =3D 0; =0A= var browser_OP6 =3D 0;=0A= var browser_OP7 =3D 0;=0A= var browser_KDE =3D 0;=0A= var browser_SAF =3D 0;=0A= =0A= var agt=3Dnavigator.userAgent.toLowerCase();=0A= =0A= if(typeof navigator.vendor !=3D "undefined" && navigator.vendor =3D=3D = "KDE"){=0A= var thisKDE =3D agt;=0A= var splitKDE =3D thisKDE.split("konqueror/");=0A= var aKDE =3D splitKDE[1] . split("; ");=0A= var KDEn =3D parseFloat(aKDE[0]);=0A= if (KDEn >=3D 2.2) {=0A= browser_KDE =3D 1;=0A= // browser_NS6 =3D 1;=0A= browser_EXCLUDE =3D 0;=0A= }=0A= }=0A= =0A= else if(agt.indexOf('webtv') !=3D -1){browser_EXCLUDE =3D 1;}=0A= =0A= else if(typeof window.opera !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= if(agt.indexOf("opera/5") !=3D -1 || agt.indexOf("opera 5") !=3D = -1){browser_OP5 =3D 1;}=0A= if(agt.indexOf("opera/6") !=3D -1 || agt.indexOf("opera 6") !=3D = -1){browser_OP6 =3D 1;}=0A= if(agt.indexOf("opera/7") !=3D -1 || agt.indexOf("opera 7") !=3D = -1){browser_OP7 =3D 1;}=0A= }=0A= =0A= else if(typeof document.all !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= browser_IE =3D 1;=0A= if(typeof document.getElementById !=3D "undefined"){=0A= browser_IE5 =3D 1;=0A= if(agt.indexOf("msie 6") !=3D -1){=0A= browser_IE6 =3D 1;=0A= }=0A= }=0A= else{browser_IE4 =3D 1;}=0A= }=0A= =0A= else if(typeof document.getElementById !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= if(agt.indexOf("netscape/6") !=3D -1 || agt.indexOf("netscape6") !=3D = -1){browser_NS6 =3D 1;}=0A= else if(agt.indexOf("netscape/7") !=3D -1 || agt.indexOf("netscape7") = !=3D -1){browser_NS6 =3D 1; browser_NS7 =3D 1;}=0A= else if(agt.indexOf("gecko") !=3D -1){browser_NS6 =3D 1; browser_MZ7 = =3D 1;}=0A= if(agt.indexOf("safari") !=3D -1 || (typeof document.childNodes !=3D = "undefined" && typeof document.all =3D=3D "undefined" && typeof = navigator.taintEnabled =3D=3D "undefined")){browser_MZ7 =3D 0; = browser_NS6 =3D 1; browser_SAF =3D 1;}=0A= }=0A= =0A= else if((agt.indexOf('mozilla') !=3D -1) && = (parseInt(navigator.appVersion) >=3D 3)){=0A= browser_EXCLUDE =3D 0;=0A= if (parseInt(navigator.appVersion) >=3D 4) {=0A= browser_NS4 =3D 1;=0A= } else {=0A= browser_NS3 =3D 1;=0A= }=0A= if(typeof navigator.mimeTypes['*'] =3D=3D "undefined"){=0A= browser_EXCLUDE =3D 1;=0A= browser_NS4 =3D 0;=0A= browser_NS3 =3D 0;=0A= }=0A= }=0A= =0A= if(agt.indexOf('escape') !=3D -1){browser_EXCLUDE =3D 1; browser_NS3 = =3D 0; browser_NS4 =3D 0;}=0A= =0A= if(typeof navigator.__ice_version !=3D "undefined"){browser_EXCLUDE = =3D 1; browser_IE4 =3D 0;}=0A= =0A= var sTemp =3D "Browser detected as ";=0A= if (browser_EXCLUDE) { sTemp +=3D "EXCLUDE " }=0A= if (browser_IE) { sTemp +=3D "IE " }=0A= if (browser_IE4) { sTemp +=3D "IE4 " }=0A= if (browser_IE5) { sTemp +=3D "IE5 " }=0A= if (browser_IE6) { sTemp +=3D "IE6 " }=0A= if (browser_MZ7) { sTemp +=3D "MZ7 " }=0A= if (browser_NS3) { sTemp +=3D "NS3 " }=0A= if (browser_NS4) { sTemp +=3D "NS4 " }=0A= if (browser_NS6) { sTemp +=3D "NS6 " }=0A= if (browser_NS7) { sTemp +=3D "NS7 " }=0A= if (browser_OP5) { sTemp +=3D "OP5 " }=0A= if (browser_OP6) { sTemp +=3D "OP6 " }=0A= if (browser_OP7) { sTemp +=3D "OP7 " }=0A= if (browser_KDE) { sTemp +=3D "KDE " }=0A= if (browser_SAF) { sTemp +=3D "SAF " }=0A= // alert(sTemp);=0A= ------=_NextPart_000_004F_01C8D879.E4867A80--

`1.`	`gi\|115456623 Mass: = ;48564 Score: 154 Expect:&n= bsp;1.9e-10 Queries=20 matched: 14`
	`Os03g0851100 [Oryza sativa (japonica=20 cultivar-group)]`

	`gi\|108712132 Mass: = ;33978 Score: 86 Expect:<= /B> 0.0012 Queries=20 matched: 9`
	`Elongation factor Tu, mitochondrial precursor, = putative,=20 expressed [Oryza sativa (japonica=20 cultivar-group)]`

	`gi\|11181616 Mass: = 48746 Score: 72 Expect:<= /B> 0.031 Queries=20 matched: 8`
	`translational elongation factor EF-TuM [Zea=20 mays]`

	`gi\|147784261 Mass: = ;49185 Score: 60 &nbs= p; Expect: 0.48 Queries=20 matched: 7`
	`hypothetical protein [Vitis=20 vinifera]`

	`gi\|157347885 Mass: = ;49198 Score: 60 &nbs= p; Expect: 0.48 Queries=20 matched: 7`
	`unnamed protein product [Vitis=20 vinifera]`

	`gi\|125554398 Mass: = ;38251 Score: 51 &nbs= p; Expect: 3.5 Queries=20 matched: 7`
	`hypothetical protein OsI_021236 [Oryza sativa (indica = cultivar-group)]`

	`gi\|21326503 Mass: = 41755 Score: 45 = ; Expect: 16 Queries=20 matched: 6`
	`Putative retrotransposable elements TNP2 [Oryza = sativa=20 (japonica cultivar-group)]`

	`gi\|22953952 Mass: = 26240 Score: 41 = ; Expect: 41 Queries=20 matched: 5`
	`Putative retrotransposable elements TNP2 [Oryza = sativa=20 (japonica cultivar-group)]`

	`gi\|20270076 Mass: = 18954 Score: 40 = ; Expect: 44 Queries=20 matched: 4`
	`Putative transposase [Oryza sativa (japonica=20 cultivar-group)]`

	`gi\|125596348 Mass: = ;56260 Score: 40 &nbs= p; Expect: 47 Queries=20 matched: 7`
	`hypothetical protein OsJ_019611 [Oryza sativa = (japonica=20 cultivar-group)]`

		Help
	Significance threshold p<	Max. number of hits

	`gi\|59381151 Mass: = 7408 Score: 39 = Expect: 64 Queries=20 matched: 3`
	`trypsin inhibitor [Lens = culinaris]`

	`gi\|12330508 Mass: = 21820 Score: 38 = ; Expect: 77 Queries=20 matched: 4`
	`ribosomal protein 4 [Rhachithecium=20 papillosum]`

	`gi\|168037551 Mass: = ;14717 Score: 38 &nbs= p; Expect: 78 Queries=20 matched: 4`
	`predicted protein [Physcomitrella patens subsp.=20 patens]`

	`gi\|22854701 Mass: = 21490 Score: 38 = ; Expect: 82 Queries=20 matched: 4`
	`small ribosomal protein 4 [Dicranoloma=20 menziesii]`

Mascot Search=20 Results

Probability Based Mowse Score

Concise Protein Summary Report

Search Parameters