From: "Saved by Windows Internet Explorer 7" Subject: Concise Summary Report (../data/20080627/FtgernsSt.dat) Date: Fri, 27 Jun 2008 17:00:37 -0400 MIME-Version: 1.0 Content-Type: multipart/related; type="text/html"; boundary="----=_NextPart_000_002D_01C8D877.5265F2E0" X-MimeOLE: Produced By Microsoft MimeOLE V6.0.6000.16545 This is a multi-part message in MIME format. ------=_NextPart_000_002D_01C8D877.5265F2E0 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: quoted-printable Content-Location: http://www.matrixscience.com/cgi/master_results.pl?file=../data/20080627/FtgernsSt.dat =EF=BB=BF Concise Summary Report = (../data/20080627/FtgernsSt.dat)

Mascot Search=20 Results

User    =
        : daishaojun
Email           : sdai@ufl.edu
Search title    : 
Database        : NCBInr 20080616 (6589360 sequences; 2253133281 =
residues)
Taxonomy        : Viridiplantae (Green Plants) (483498 sequences)
Timestamp       : 27 Jun 2008 at 20:59:56 GMT
Top Score       : 83 for gi|115453317, =
Os03g0387100 [Oryza sativa (japonica cultivar-group)]

Probability Based Mowse Score

Protein score is -10*Log(P), where = P is=20 the probability that the observed match is a random event.
Protein = scores=20 greater than 69 are significant (p<0.05).

3D"Score =20

= =20 =20 = =20 =20 = =20 =20 = =20 = =20 =20 =20 =20 =20 = = =20

=20

1.     gi|115453317    Mass: = ;25828    Score: 83     Expect:<= /B> 0.0026  Queries=20 matched: 8

Os03g0387100 [Oryza sativa (japonica=20 cultivar-group)]

       gi|125561730    Mass: = ;29248    Score: 79     Expect:<= /B> 0.0057  Queries=20 matched: 8

hypothetical protein OsI_028410 [Oryza sativa (indica = cultivar-group)]

       gi|125586489    Mass: = ;32722    Score: 76     Expect:<= /B> 0.012  Queries=20 matched: 8

hypothetical protein OsJ_010636 [Oryza sativa = (japonica=20 cultivar-group)]

`2.`	`gi\|115447473 Mass: = ;25828 Score: 83 Expect:<= /B> 0.0026 Queries=20 matched: 8`
	`Os02g0634900 [Oryza sativa (japonica=20 cultivar-group)]`

	`gi\|125540420 Mass: = ;28470 Score: 78 Expect:<= /B> 0.007 Queries=20 matched: 8`
	`hypothetical protein OsI_008048 [Oryza sativa (indica = cultivar-group)]`

	`gi\|186509971 Mass: = ;4840 Score: 45 = ; Expect: 17 Queries=20 matched: 3`
	`unknown protein [Arabidopsis=20 thaliana]`

`3.`	`gi\|6513818 Mass: 6= 3396 Score: 59 = Expect: 0.56 Queries=20 matched: 8`
	`maturase [Doryphora = sassafras]`

	`gi\|6513816 Mass: 6= 9115 Score: 55 = Expect: 1.4 Queries=20 matched: 8`
	`maturase [Atherosperma = moschatum]`

	`gi\|6513817 Mass: 6= 9188 Score: 55 = Expect: 1.5 Queries=20 matched: 8`
	`maturase [Daphnandra = micrantha]`

	`gi\|6513820 Mass: 6= 3442 Score: 45 = Expect: 17 Queries=20 matched: 7`
	`maturase [Peumus = boldus]`

	`gi\|6513813 Mass: 6= 6724 Score: 44 = Expect: 17 Queries=20 matched: 7`
	`maturase [Dicentra sp. Qiu = 95026]`

	`gi\|6513774 Mass: 6= 7599 Score: 44 = Expect: 18 Queries=20 matched: 7`
	`maturase [Canella = winterana]`

	`gi\|6513775 Mass: 6= 6641 Score: 44 = Expect: 19 Queries=20 matched: 7`
	`maturase [Cinnamodendron = ekmanii]`

	`gi\|6513785 Mass: 6= 7203 Score: 44 = Expect: 20 Queries=20 matched: 7`
	`maturase [Myristica = fragrans]`

	`gi\|6513769 Mass: 6= 7778 Score: 44 = Expect: 22 Queries=20 matched: 7`
	`maturase [Saruma = henryi]`

	`gi\|6513784 Mass: 6= 6556 Score: 43 = Expect: 25 Queries=20 matched: 7`
	`maturase [Knema = latericia]`

	`gi\|6513789 Mass: 6= 8861 Score: 41 = Expect: 38 Queries=20 matched: 7`
	`maturase [Eupomatia = bennettii]`

	`gi\|6513799 Mass: 6= 9042 Score: 41 = Expect: 38 Queries=20 matched: 7`
	`maturase [Tasmannia = insipida]`

	`gi\|6513798 Mass: 6= 9171 Score: 41 = Expect: 38 Queries=20 matched: 7`
	`maturase [Drimys = winteri]`

	`gi\|6513805 Mass: 6= 9207 Score: 41 = Expect: 39 Queries=20 matched: 7`
	`maturase [Sanguinaria = canadensis]`

Search Parameters

Type of search         : Peptide Mass =
Fingerprint
Enzyme                 : Trypsin
Fixed modifications    : Carbamidomethyl (C)
Variable modifications : Oxidation (M)
Mass values            : Monoisotopic
Protein Mass           : Unrestricted
Peptide Mass Tolerance : =C2=B1 0.3 Da
Peptide Charge State   : 1+
Max Missed Cleavages   : 1
Number of queries      : 20

Mascot: http://www.matrixscience.com/ =

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=3D 1; browser_MZ7 = =3D 1;}=0A= if(agt.indexOf("safari") !=3D -1 || (typeof document.childNodes !=3D = "undefined" && typeof document.all =3D=3D "undefined" && typeof = navigator.taintEnabled =3D=3D "undefined")){browser_MZ7 =3D 0; = browser_NS6 =3D 1; browser_SAF =3D 1;}=0A= }=0A= =0A= else if((agt.indexOf('mozilla') !=3D -1) && = (parseInt(navigator.appVersion) >=3D 3)){=0A= browser_EXCLUDE =3D 0;=0A= if (parseInt(navigator.appVersion) >=3D 4) {=0A= browser_NS4 =3D 1;=0A= } else {=0A= browser_NS3 =3D 1;=0A= }=0A= if(typeof navigator.mimeTypes['*'] =3D=3D "undefined"){=0A= browser_EXCLUDE =3D 1;=0A= browser_NS4 =3D 0;=0A= browser_NS3 =3D 0;=0A= }=0A= }=0A= =0A= if(agt.indexOf('escape') !=3D -1){browser_EXCLUDE =3D 1; browser_NS3 = =3D 0; browser_NS4 =3D 0;}=0A= =0A= if(typeof navigator.__ice_version !=3D "undefined"){browser_EXCLUDE = =3D 1; browser_IE4 =3D 0;}=0A= =0A= var sTemp =3D "Browser detected as ";=0A= if (browser_EXCLUDE) { sTemp +=3D "EXCLUDE " }=0A= if (browser_IE) { sTemp +=3D "IE " }=0A= if (browser_IE4) { sTemp +=3D "IE4 " }=0A= if (browser_IE5) { sTemp +=3D "IE5 " }=0A= if (browser_IE6) { sTemp +=3D "IE6 " }=0A= if (browser_MZ7) { sTemp +=3D "MZ7 " }=0A= if (browser_NS3) { sTemp +=3D "NS3 " }=0A= if (browser_NS4) { sTemp +=3D "NS4 " }=0A= if (browser_NS6) { sTemp +=3D "NS6 " }=0A= if (browser_NS7) { sTemp +=3D "NS7 " }=0A= if (browser_OP5) { sTemp +=3D "OP5 " }=0A= if (browser_OP6) { sTemp +=3D "OP6 " }=0A= if (browser_OP7) { sTemp +=3D "OP7 " }=0A= if (browser_KDE) { sTemp +=3D "KDE " }=0A= if (browser_SAF) { sTemp +=3D "SAF " }=0A= // alert(sTemp);=0A= ------=_NextPart_000_002D_01C8D877.5265F2E0--

`1.`	`gi\|115453317 Mass: = ;25828 Score: 83 Expect:<= /B> 0.0026 Queries=20 matched: 8`
	`Os03g0387100 [Oryza sativa (japonica=20 cultivar-group)]`

	`gi\|125561730 Mass: = ;29248 Score: 79 Expect:<= /B> 0.0057 Queries=20 matched: 8`
	`hypothetical protein OsI_028410 [Oryza sativa (indica = cultivar-group)]`

	`gi\|125586489 Mass: = ;32722 Score: 76 Expect:<= /B> 0.012 Queries=20 matched: 8`
	`hypothetical protein OsJ_010636 [Oryza sativa = (japonica=20 cultivar-group)]`

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	Significance threshold p<	Max. number of hits

Mascot Search=20 Results

Probability Based Mowse Score

Concise Protein Summary Report

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