From: "Saved by Windows Internet Explorer 7" Subject: Concise Summary Report (../data/20080627/Ftgernctm.dat) Date: Fri, 27 Jun 2008 15:17:37 -0400 MIME-Version: 1.0 Content-Type: multipart/related; type="text/html"; boundary="----=_NextPart_000_0024_01C8D868.EEB225B0" X-MimeOLE: Produced By Microsoft MimeOLE V6.0.6000.16545 This is a multi-part message in MIME format. ------=_NextPart_000_0024_01C8D868.EEB225B0 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: quoted-printable Content-Location: http://www.matrixscience.com/cgi/master_results.pl?file=../data/20080627/Ftgernctm.dat =EF=BB=BF Concise Summary Report = (../data/20080627/Ftgernctm.dat)

Mascot Search=20 Results

User    =
        : daishaojun
Email           : sdai@ufl.edu
Search title    : 
Database        : NCBInr 20080616 (6589360 sequences; 2253133281 =
residues)
Taxonomy        : Viridiplantae (Green Plants) (483498 sequences)
Timestamp       : 27 Jun 2008 at 19:17:01 GMT
Top Score       : 109 for gi|115454971, =
Os03g0718100 [Oryza sativa (japonica cultivar-group)]

Probability Based Mowse Score

Protein score is -10*Log(P), where = P is=20 the probability that the observed match is a random event.
Protein = scores=20 greater than 69 are significant (p<0.05).

3D"Score=20

=20

Concise Protein Summary Report

Help
  Significance threshold p< Max. number of hits
= =20 =20 = =20 =20 =20 = =20 =20 = =20 =20 = =20 =20 =20 =20 =20 = = =20

  =20

1.     gi|115454971    Mass: = ;42014    Score: 109    Expect:&n= bsp;6.1e-06  Queries=20 matched: 14
  Os03g0718100 [Oryza sativa (japonica=20 cultivar-group)]
       gi|1703107    Mass: 4= 2121    Score: 106    Expect:&n= bsp;1.2e-05  Queries=20 matched: 13
  Actin-1
       gi|3219758    Mass: 3= 7286    Score: 99     Expect:<= /B> 5.6e-05  Queries=20 matched: 12
  Actin-66
       gi|15076949    Mass: = 41835    Score: 94     Expect:<= /B> 0.00022  Queries=20 matched: 12
  actin [Musa ABB Group]
       gi|151413783    Mass: = ;41780    Score: 93     Expect:<= /B> 0.00025  Queries=20 matched: 12
  actin [Musa acuminata]
       gi|231496    Mass: 41= 987    Score: 92     Expect:<= /B> 0.00031  Queries=20 matched: 12
  Actin-58
       gi|55820068    Mass: = 41948    Score: 92     Expect:<= /B> 0.00033  Queries=20 matched: 12
  stem cambial region actin protein [Eucommia=20 ulmoides]
       gi|147866522    Mass: = ;42016    Score: 92     Expect:<= /B> 0.00033  Queries=20 matched: 12
  hypothetical protein [Vitis=20 vinifera]
       gi|20322    Mass: 422= 11    Score: 91     Expect:<= /B> 0.0004  Queries=20 matched: 13
  unnamed protein product [Oryza sativa (indica=20 cultivar-group)]
       gi|295885    Mass: 42= 168    Score: 91     Expect:<= /B> 0.0004  Queries=20 matched: 13
  actin [Oryza sativa (indica=20 cultivar-group)]
       gi|3219759    Mass: 3= 7282    Score: 85     Expect:<= /B> 0.0015  Queries=20 matched: 11
  Actin-79
       gi|1498330    Mass: 3= 7264    Score: 85     Expect:<= /B> 0.0016  Queries=20 matched: 11
  actin [Glycine max]
       gi|125592529    Mass: = ;43133    Score: 80     Expect:<= /B> 0.0046  Queries=20 matched: 11
  hypothetical protein OsJ_016071 [Oryza sativa = (japonica=20 cultivar-group)]
       gi|231503    Mass: 41= 844    Score: 79     Expect:<= /B> 0.0059  Queries=20 matched: 11
  Actin-97
       gi|24496452    Mass: = 41929    Score: 79     Expect:<= /B> 0.0059  Queries=20 matched: 11
  actin [Hordeum = vulgare]
       gi|115461639    Mass: = ;41897    Score: 79     Expect:<= /B> 0.0059  Queries=20 matched: 11
  Os05g0106600 [Oryza sativa (japonica=20 cultivar-group)]
       gi|115489824    Mass: = ;41799    Score: 79     Expect:<= /B> 0.0064  Queries=20 matched: 10
  Os12g0641000 [Oryza sativa (japonica=20 cultivar-group)]
       gi|125537570    Mass: = ;43190    Score: 79     Expect:<= /B> 0.0064  Queries=20 matched: 10
  hypothetical protein OsI_038017 [Oryza sativa (indica = cultivar-group)]
       gi|1531672    Mass: 4= 1945    Score: 79     Expect:<= /B> 0.0065  Queries=20 matched: 11
  actin [Striga = asiatica]
       gi|81076210    Mass: = 41969    Score: 78     Expect:<= /B> 0.0086  Queries=20 matched: 11
  actin-like [Solanum = tuberosum]
       gi|7960245    Mass: 4= 1911    Score: 77     Expect:<= /B> 0.009  Queries=20 matched: 11
  actin-like protein [Phalaenopsis sp. 'True=20 Lady']
       gi|23092520    Mass: = 41925    Score: 77     Expect:<= /B> 0.009  Queries=20 matched: 11
  actin [Phalaenopsis hybrid=20 cultivar]
       gi|54035683    Mass: = 41867    Score: 77     Expect:<= /B> 0.01  Queries=20 matched: 10
  Actin
       gi|461465    Mass: 41= 940    Score: 75     Expect:<= /B> 0.016  Queries=20 matched: 10
  Actin
       gi|3219771    Mass: 3= 7234    Score: 72     Expect:<= /B> 0.028  Queries=20 matched: 10
  Actin-41
       gi|1498390    Mass: 3= 7273    Score: 71     Expect:<= /B> 0.038  Queries=20 matched: 9
  actin [Zea mays]
       gi|83423376    Mass: = 32420    Score: 70     Expect:<= /B> 0.052  Queries=20 matched: 8
  actin [Capsicum = chinense]
       gi|138977902    Mass: = ;30551    Score: 70     Expect:<= /B> 0.052  Queries=20 matched: 8
  actin [Cocos nucifera]
       gi|231504    Mass: 39= 756    Score: 69     Expect:<= /B> 0.056  Queries=20 matched: 10
  Actin-100
       gi|3219769    Mass: 3= 7002    Score: 68    =  Expect: 0.078  Queries=20 matched: 10
  Actin-42
       gi|1498388    Mass: 3= 7244    Score: 68    =  Expect: 0.086  Queries=20 matched: 10
  actin [Zea mays]
       gi|56181502    Mass: = 40339    Score: 68    = ; Expect: 0.086  Queries=20 matched: 10
  putative actin 2 [Chorispora=20 bungeana]
       gi|112280267    Mass: = ;32425    Score: 67   &nbs= p; Expect: 0.088  Queries=20 matched: 8
  actin [Aegiceras = corniculatum]
       gi|50058115    Mass: = 41885    Score: 67    = ; Expect: 0.099  Queries=20 matched: 10
  actin [Nicotiana = tabacum]
       gi|231502    Mass: 21= 681    Score: 67    &= nbsp;Expect: 0.099  Queries=20 matched: 7
  Actin-85C
       gi|2253219    Mass: 3= 7114    Score: 66    =  Expect: 0.11  Queries=20 matched: 8
  actin 2 [Podocarpus = macrophyllus]
       gi|15229955    Mass: = 41876    Score: 66    = ; Expect: 0.12  Queries=20 matched: 10
  ACT11 (ACTIN-11); structural constituent of = cytoskeleton=20 [Arabidopsis thaliana]
       gi|187937280    Mass: = ;42096    Score: 66   &nbs= p; Expect: 0.12  Queries=20 matched: 10
  actin [Cicer = arietinum]
       gi|231505    Mass: 41= 902    Score: 66    &= nbsp;Expect: 0.14  Queries=20 matched: 10
  Actin-101
       gi|3219760    Mass: 3= 7274    Score: 65    =  Expect: 0.14  Queries=20 matched: 9
  Actin-93
       gi|37650549    Mass: = 28580    Score: 63    = ; Expect: 0.23  Queries=20 matched: 8
  putative actin [Lolium=20 multiflorum]
       gi|115484337    Mass: = ;41824    Score: 62   &nbs= p; Expect: 0.34  Queries=20 matched: 8
  Os11g0163100 [Oryza sativa (japonica=20 cultivar-group)]
       gi|7960247    Mass: 4= 1852    Score: 62    =  Expect: 0.34  Queries=20 matched: 8
  actin-like protein [Phalaenopsis sp. 'True=20 Lady']
       gi|6103623    Mass: 4= 1792    Score: 62    =  Expect: 0.34  Queries=20 matched: 8
  actin [Picea rubens]
       gi|9965319    Mass: 4= 1884    Score: 62    =  Expect: 0.34  Queries=20 matched: 8
  actin [Setaria = italica]
       gi|157355850    Mass: = ;41794    Score: 61   &nbs= p; Expect: 0.4  Queries=20 matched: 8
  unnamed protein product [Vitis=20 vinifera]
       gi|125533526    Mass: = ;43440    Score: 60   &nbs= p; Expect: 0.44  Queries=20 matched: 8
  hypothetical protein OsI_034033 [Oryza sativa (indica = cultivar-group)]
       gi|147776496    Mass: = ;41918    Score: 60   &nbs= p; Expect: 0.47  Queries=20 matched: 8
  hypothetical protein [Vitis=20 vinifera]
       gi|118481119    Mass: = ;41918    Score: 60   &nbs= p; Expect: 0.47  Queries=20 matched: 8
  unknown [Populus = trichocarpa]

2.     gi|1498344    Mass: 3= 7155    Score: 68    =  Expect: 0.082  Queries=20 matched: 9
  actin [Glycine max]

Search Parameters

Type of search         : Peptide Mass =
Fingerprint
Enzyme                 : Trypsin
Fixed modifications    : Carbamidomethyl (C)
Variable modifications : Oxidation (M)
Mass values            : Monoisotopic
Protein Mass           : Unrestricted
Peptide Mass Tolerance : =C2=B1 0.3 Da
Peptide Charge State   : 1+
Max Missed Cleavages   : 1
Number of queries      : 26

Mascot:  http://www.matrixscience.com/ =

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"undefined"){=0A= browser_EXCLUDE =3D 0;=0A= browser_IE =3D 1;=0A= if(typeof document.getElementById !=3D "undefined"){=0A= browser_IE5 =3D 1;=0A= if(agt.indexOf("msie 6") !=3D -1){=0A= browser_IE6 =3D 1;=0A= }=0A= }=0A= else{browser_IE4 =3D 1;}=0A= }=0A= =0A= else if(typeof document.getElementById !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= if(agt.indexOf("netscape/6") !=3D -1 || agt.indexOf("netscape6") !=3D = -1){browser_NS6 =3D 1;}=0A= else if(agt.indexOf("netscape/7") !=3D -1 || agt.indexOf("netscape7") = !=3D -1){browser_NS6 =3D 1; browser_NS7 =3D 1;}=0A= else if(agt.indexOf("gecko") !=3D -1){browser_NS6 =3D 1; browser_MZ7 = =3D 1;}=0A= if(agt.indexOf("safari") !=3D -1 || (typeof document.childNodes !=3D = "undefined" && typeof document.all =3D=3D "undefined" && typeof = navigator.taintEnabled =3D=3D "undefined")){browser_MZ7 =3D 0; = browser_NS6 =3D 1; browser_SAF =3D 1;}=0A= }=0A= =0A= else if((agt.indexOf('mozilla') !=3D -1) && = (parseInt(navigator.appVersion) >=3D 3)){=0A= browser_EXCLUDE =3D 0;=0A= if (parseInt(navigator.appVersion) >=3D 4) {=0A= browser_NS4 =3D 1;=0A= } else {=0A= browser_NS3 =3D 1;=0A= }=0A= if(typeof navigator.mimeTypes['*'] =3D=3D "undefined"){=0A= browser_EXCLUDE =3D 1;=0A= browser_NS4 =3D 0;=0A= browser_NS3 =3D 0;=0A= }=0A= }=0A= =0A= if(agt.indexOf('escape') !=3D -1){browser_EXCLUDE =3D 1; browser_NS3 = =3D 0; browser_NS4 =3D 0;}=0A= =0A= if(typeof navigator.__ice_version !=3D "undefined"){browser_EXCLUDE = =3D 1; browser_IE4 =3D 0;}=0A= =0A= var sTemp =3D "Browser detected as ";=0A= if (browser_EXCLUDE) { sTemp +=3D "EXCLUDE " }=0A= if (browser_IE) { sTemp +=3D "IE " }=0A= if (browser_IE4) { sTemp +=3D "IE4 " }=0A= if (browser_IE5) { sTemp +=3D "IE5 " }=0A= if (browser_IE6) { sTemp +=3D "IE6 " }=0A= if (browser_MZ7) { sTemp +=3D "MZ7 " }=0A= if (browser_NS3) { sTemp +=3D "NS3 " }=0A= if (browser_NS4) { sTemp +=3D "NS4 " }=0A= if (browser_NS6) { sTemp +=3D "NS6 " }=0A= if (browser_NS7) { sTemp +=3D "NS7 " }=0A= if (browser_OP5) { sTemp +=3D "OP5 " }=0A= if (browser_OP6) { sTemp +=3D "OP6 " }=0A= if (browser_OP7) { sTemp +=3D "OP7 " }=0A= if (browser_KDE) { sTemp +=3D "KDE " }=0A= if (browser_SAF) { sTemp +=3D "SAF " }=0A= // alert(sTemp);=0A= ------=_NextPart_000_0024_01C8D868.EEB225B0--