From: "Saved by Windows Internet Explorer 7" Subject: Concise Summary Report (../data/20080627/FtgernctO.dat) Date: Fri, 27 Jun 2008 15:14:06 -0400 MIME-Version: 1.0 Content-Type: multipart/related; type="text/html"; boundary="----=_NextPart_000_001B_01C8D868.7158E9F0" X-MimeOLE: Produced By Microsoft MimeOLE V6.0.6000.16545 This is a multi-part message in MIME format. ------=_NextPart_000_001B_01C8D868.7158E9F0 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: quoted-printable Content-Location: http://www.matrixscience.com/cgi/master_results.pl?file=../data/20080627/FtgernctO.dat =EF=BB=BF Concise Summary Report = (../data/20080627/FtgernctO.dat)

Mascot Search=20 Results

User    =
        : daishaojun
Email           : sdai@ufl.edu
Search title    : 
Database        : NCBInr 20080616 (6589360 sequences; 2253133281 =
residues)
Taxonomy        : Viridiplantae (Green Plants) (483498 sequences)
Timestamp       : 27 Jun 2008 at 19:12:23 GMT
Top Score       : 98 for gi|115439827, =
Os01g0739000 [Oryza sativa (japonica cultivar-group)]

Probability Based Mowse Score

Protein score is -10*Log(P), where = P is=20 the probability that the observed match is a random event.
Protein = scores=20 greater than 69 are significant (p<0.05).

3D"Score =20

= =20 =20 = =20 =20 = =20 =20 = =20 = =20 =20 =20 =20 = = =20

=20

1.     gi|115439827    Mass: = ;54365    Score: 98     Expect:<= /B> 7e-05  Queries=20 matched: 10

Os01g0739000 [Oryza sativa (japonica=20 cultivar-group)]

       gi|125527645    Mass: = ;61909    Score: 93     Expect:<= /B> 0.00024  Queries=20 matched: 10

hypothetical protein OsI_003606 [Oryza sativa (indica = cultivar-group)]

       gi|125571961    Mass: = ;58149    Score: 81     Expect:<= /B> 0.0039  Queries=20 matched: 9

hypothetical protein OsJ_003301 [Oryza sativa = (japonica=20 cultivar-group)]

       gi|157349829    Mass: = ;29308    Score: 37   &nbs= p; Expect: 1e+02  Queries=20 matched: 4

unnamed protein product [Vitis=20 vinifera]

       gi|29244674    Mass: = 29503    Score: 35    = ; Expect: 1.5e+02  Queries=20 matched: 4

hypothetical protein [Oryza sativa (japonica=20 cultivar-group)]

`2.`	`gi\|168060779 Mass: = ;36403 Score: 75 Expect:<= /B> 0.014 Queries=20 matched: 8`
	`predicted protein [Physcomitrella patens subsp.=20 patens]`

	`gi\|92886085 Mass: = 6482 Score: 38 = Expect: 75 Queries=20 matched: 4`
	`hypothetical protein MtrDRAFT_AC147431g44v2 [Medicago = truncatula]`

`3.`	`gi\|145347257 Mass: = ;22152 Score: 48 &nbs= p; Expect: 7.5 Queries=20 matched: 5`
	`predicted protein [Ostreococcus lucimarinus=20 CCE9901]`

Search Parameters

Type of search         : Peptide Mass =
Fingerprint
Enzyme                 : Trypsin
Fixed modifications    : Carbamidomethyl (C)
Variable modifications : Oxidation (HW)
Mass values            : Monoisotopic
Protein Mass           : Unrestricted
Peptide Mass Tolerance : =C2=B1 0.3 Da
Peptide Charge State   : 1+
Max Missed Cleavages   : 1
Number of queries      : 20

Mascot: http://www.matrixscience.com/ =

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parseFloat(aKDE[0]);=0A= if (KDEn >=3D 2.2) {=0A= browser_KDE =3D 1;=0A= // browser_NS6 =3D 1;=0A= browser_EXCLUDE =3D 0;=0A= }=0A= }=0A= =0A= else if(agt.indexOf('webtv') !=3D -1){browser_EXCLUDE =3D 1;}=0A= =0A= else if(typeof window.opera !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= if(agt.indexOf("opera/5") !=3D -1 || agt.indexOf("opera 5") !=3D = -1){browser_OP5 =3D 1;}=0A= if(agt.indexOf("opera/6") !=3D -1 || agt.indexOf("opera 6") !=3D = -1){browser_OP6 =3D 1;}=0A= if(agt.indexOf("opera/7") !=3D -1 || agt.indexOf("opera 7") !=3D = -1){browser_OP7 =3D 1;}=0A= }=0A= =0A= else if(typeof document.all !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= browser_IE =3D 1;=0A= if(typeof document.getElementById !=3D "undefined"){=0A= browser_IE5 =3D 1;=0A= if(agt.indexOf("msie 6") !=3D -1){=0A= browser_IE6 =3D 1;=0A= }=0A= }=0A= else{browser_IE4 =3D 1;}=0A= }=0A= =0A= else if(typeof document.getElementById !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= if(agt.indexOf("netscape/6") !=3D -1 || agt.indexOf("netscape6") !=3D = -1){browser_NS6 =3D 1;}=0A= else if(agt.indexOf("netscape/7") !=3D -1 || agt.indexOf("netscape7") = !=3D -1){browser_NS6 =3D 1; browser_NS7 =3D 1;}=0A= else if(agt.indexOf("gecko") !=3D -1){browser_NS6 =3D 1; browser_MZ7 = =3D 1;}=0A= if(agt.indexOf("safari") !=3D -1 || (typeof document.childNodes !=3D = "undefined" && typeof document.all =3D=3D "undefined" && typeof = navigator.taintEnabled =3D=3D "undefined")){browser_MZ7 =3D 0; = browser_NS6 =3D 1; browser_SAF =3D 1;}=0A= }=0A= =0A= else if((agt.indexOf('mozilla') !=3D -1) && = (parseInt(navigator.appVersion) >=3D 3)){=0A= browser_EXCLUDE =3D 0;=0A= if (parseInt(navigator.appVersion) >=3D 4) {=0A= browser_NS4 =3D 1;=0A= } else {=0A= browser_NS3 =3D 1;=0A= }=0A= if(typeof navigator.mimeTypes['*'] =3D=3D "undefined"){=0A= browser_EXCLUDE =3D 1;=0A= browser_NS4 =3D 0;=0A= browser_NS3 =3D 0;=0A= }=0A= }=0A= =0A= if(agt.indexOf('escape') !=3D -1){browser_EXCLUDE =3D 1; browser_NS3 = =3D 0; browser_NS4 =3D 0;}=0A= =0A= if(typeof navigator.__ice_version !=3D "undefined"){browser_EXCLUDE = =3D 1; browser_IE4 =3D 0;}=0A= =0A= var sTemp =3D "Browser detected as ";=0A= if (browser_EXCLUDE) { sTemp +=3D "EXCLUDE " }=0A= if (browser_IE) { sTemp +=3D "IE " }=0A= if (browser_IE4) { sTemp +=3D "IE4 " }=0A= if (browser_IE5) { sTemp +=3D "IE5 " }=0A= if (browser_IE6) { sTemp +=3D "IE6 " }=0A= if (browser_MZ7) { sTemp +=3D "MZ7 " }=0A= if (browser_NS3) { sTemp +=3D "NS3 " }=0A= if (browser_NS4) { sTemp +=3D "NS4 " }=0A= if (browser_NS6) { sTemp +=3D "NS6 " }=0A= if (browser_NS7) { sTemp +=3D "NS7 " }=0A= if (browser_OP5) { sTemp +=3D "OP5 " }=0A= if (browser_OP6) { sTemp +=3D "OP6 " }=0A= if (browser_OP7) { sTemp +=3D "OP7 " }=0A= if (browser_KDE) { sTemp +=3D "KDE " }=0A= if (browser_SAF) { sTemp +=3D "SAF " }=0A= // alert(sTemp);=0A= ------=_NextPart_000_001B_01C8D868.7158E9F0--

`1.`	`gi\|115439827 Mass: = ;54365 Score: 98 Expect:<= /B> 7e-05 Queries=20 matched: 10`
	`Os01g0739000 [Oryza sativa (japonica=20 cultivar-group)]`

	`gi\|125527645 Mass: = ;61909 Score: 93 Expect:<= /B> 0.00024 Queries=20 matched: 10`
	`hypothetical protein OsI_003606 [Oryza sativa (indica = cultivar-group)]`

	`gi\|125571961 Mass: = ;58149 Score: 81 Expect:<= /B> 0.0039 Queries=20 matched: 9`
	`hypothetical protein OsJ_003301 [Oryza sativa = (japonica=20 cultivar-group)]`

	`gi\|157349829 Mass: = ;29308 Score: 37 &nbs= p; Expect: 1e+02 Queries=20 matched: 4`
	`unnamed protein product [Vitis=20 vinifera]`

	`gi\|29244674 Mass: = 29503 Score: 35 = ; Expect: 1.5e+02 Queries=20 matched: 4`
	`hypothetical protein [Oryza sativa (japonica=20 cultivar-group)]`

		Help
	Significance threshold p<	Max. number of hits

Mascot Search=20 Results

Probability Based Mowse Score

Concise Protein Summary Report

Search Parameters