From: "Saved by Windows Internet Explorer 7" Subject: Concise Summary Report (../data/20080627/Ftgerncnt.dat) Date: Fri, 27 Jun 2008 15:09:53 -0400 MIME-Version: 1.0 Content-Type: multipart/related; type="text/html"; boundary="----=_NextPart_000_0012_01C8D867.DA37A4D0" X-MimeOLE: Produced By Microsoft MimeOLE V6.0.6000.16545 This is a multi-part message in MIME format. ------=_NextPart_000_0012_01C8D867.DA37A4D0 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: quoted-printable Content-Location: http://www.matrixscience.com/cgi/master_results.pl?file=../data/20080627/Ftgerncnt.dat =EF=BB=BF Concise Summary Report = (../data/20080627/Ftgerncnt.dat)

Mascot Search=20 Results

User    =
        : daishaojun
Email           : sdai@ufl.edu
Search title    : 
Database        : NCBInr 20080616 (6589360 sequences; 2253133281 =
residues)
Taxonomy        : Viridiplantae (Green Plants) (483498 sequences)
Timestamp       : 27 Jun 2008 at 19:09:15 GMT
Top Score       : 73 for gi|115459078, =
Os04g0486600 [Oryza sativa (japonica cultivar-group)]

Probability Based Mowse Score

Protein score is -10*Log(P), where = P is=20 the probability that the observed match is a random event.
Protein = scores=20 greater than 69 are significant (p<0.05).

3D"Score =20

= =20 =20 =20 =20 = =20 =20 =20 =20 =20 =20 =20 =20 =20 = = =20

=20

1.     gi|115459078    Mass: = ;36921    Score: 73     Expect:<= /B> 0.024  Queries=20 matched: 7

Os04g0486600 [Oryza sativa (japonica=20 cultivar-group)]

       gi|125548785    Mass: = ;42368    Score: 70     Expect:<= /B> 0.054  Queries=20 matched: 7

hypothetical protein OsI_015840 [Oryza sativa (indica = cultivar-group)]

       gi|149390629    Mass: = ;23785    Score: 67   &nbs= p; Expect: 0.1  Queries=20 matched: 6

glyceraldehyde-3-phosphate dehydrogenase [Oryza = sativa=20 (indica cultivar-group)]

       gi|149391151    Mass: = ;28468    Score: 45   &nbs= p; Expect: 16  Queries=20 matched: 5

glyceraldehyde-3-phosphate dehydrogenase [Oryza = sativa=20 (indica cultivar-group)]

       gi|145356082    Mass: = ;36385    Score: 40   &nbs= p; Expect: 47  Queries=20 matched: 4

predicted protein [Ostreococcus lucimarinus=20 CCE9901]

       gi|115447137    Mass: = ;36716    Score: 40   &nbs= p; Expect: 54  Queries=20 matched: 5

Os02g0601300 [Oryza sativa (japonica=20 cultivar-group)]

       gi|162462949    Mass: = ;36597    Score: 39   &nbs= p; Expect: 56  Queries=20 matched: 5

cytosolic glyceroldehyde-3-phosphate dehydrogenase = GAPC3=20 [Zea mays]

       gi|162458671    Mass: = ;36656    Score: 39   &nbs= p; Expect: 56  Queries=20 matched: 5

cytosolic glyceroldehyde-3-phosphate dehydrogenase = GAPC4=20 [Zea mays]

       gi|125540174    Mass: = ;39178    Score: 38   &nbs= p; Expect: 70  Queries=20 matched: 5

hypothetical protein OsI_007802 [Oryza sativa (indica = cultivar-group)]

       gi|158512931    Mass: = ;20455    Score: 37   &nbs= p; Expect: 94  Queries=20 matched: 3

Late embryogenesis abundant protein, group 3=20 (LEA-3)

       gi|152940805    Mass: = ;20410    Score: 37   &nbs= p; Expect: 94  Queries=20 matched: 3

putative group 3 LEA protein [Oryza sativa Japonica=20 Group]

`2.`	`gi\|74419004 Mass: = 37241 Score: 53 = ; Expect: 2.5 Queries=20 matched: 6`
	`glyceraldehyde-3-phosphate dehydrogenase [Populus=20 maximowiczii x Populus nigra]`

	`gi\|118481113 Mass: = ;37271 Score: 53 &nbs= p; Expect: 2.5 Queries=20 matched: 6`
	`unknown [Populus = trichocarpa]`

	`gi\|120676 Mass: 35= 682 Score: 37 &= nbsp;Expect: 88 Queries=20 matched: 5`
	`Glyceraldehyde-3-phosphate dehydrogenase,=20 cytosolic`

	`gi\|157042763 Mass: = ;37169 Score: 37 &nbs= p; Expect: 94 Queries=20 matched: 5`
	`glyceraldehyde 3-phosphate dehydrogenase [Nicotiana=20 langsdorffii x Nicotiana sanderae]`

Search Parameters

Type of search         : Peptide Mass =
Fingerprint
Enzyme                 : Trypsin
Fixed modifications    : Carbamidomethyl (C)
Variable modifications : Oxidation (M)
Mass values            : Monoisotopic
Protein Mass           : Unrestricted
Peptide Mass Tolerance : =C2=B1 0.3 Da
Peptide Charge State   : 1+
Max Missed Cleavages   : 1
Number of queries      : 13

Mascot: http://www.matrixscience.com/ =

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=0A= else if(typeof document.all !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= browser_IE =3D 1;=0A= if(typeof document.getElementById !=3D "undefined"){=0A= browser_IE5 =3D 1;=0A= if(agt.indexOf("msie 6") !=3D -1){=0A= browser_IE6 =3D 1;=0A= }=0A= }=0A= else{browser_IE4 =3D 1;}=0A= }=0A= =0A= else if(typeof document.getElementById !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= if(agt.indexOf("netscape/6") !=3D -1 || agt.indexOf("netscape6") !=3D = -1){browser_NS6 =3D 1;}=0A= else if(agt.indexOf("netscape/7") !=3D -1 || agt.indexOf("netscape7") = !=3D -1){browser_NS6 =3D 1; browser_NS7 =3D 1;}=0A= else if(agt.indexOf("gecko") !=3D -1){browser_NS6 =3D 1; browser_MZ7 = =3D 1;}=0A= if(agt.indexOf("safari") !=3D -1 || (typeof document.childNodes !=3D = "undefined" && typeof document.all =3D=3D "undefined" && typeof = navigator.taintEnabled =3D=3D "undefined")){browser_MZ7 =3D 0; = browser_NS6 =3D 1; browser_SAF =3D 1;}=0A= }=0A= =0A= else if((agt.indexOf('mozilla') !=3D -1) && = (parseInt(navigator.appVersion) >=3D 3)){=0A= browser_EXCLUDE =3D 0;=0A= if (parseInt(navigator.appVersion) >=3D 4) {=0A= browser_NS4 =3D 1;=0A= } else {=0A= browser_NS3 =3D 1;=0A= }=0A= if(typeof navigator.mimeTypes['*'] =3D=3D "undefined"){=0A= browser_EXCLUDE =3D 1;=0A= browser_NS4 =3D 0;=0A= browser_NS3 =3D 0;=0A= }=0A= }=0A= =0A= if(agt.indexOf('escape') !=3D -1){browser_EXCLUDE =3D 1; browser_NS3 = =3D 0; browser_NS4 =3D 0;}=0A= =0A= if(typeof navigator.__ice_version !=3D "undefined"){browser_EXCLUDE = =3D 1; browser_IE4 =3D 0;}=0A= =0A= var sTemp =3D "Browser detected as ";=0A= if (browser_EXCLUDE) { sTemp +=3D "EXCLUDE " }=0A= if (browser_IE) { sTemp +=3D "IE " }=0A= if (browser_IE4) { sTemp +=3D "IE4 " }=0A= if (browser_IE5) { sTemp +=3D "IE5 " }=0A= if (browser_IE6) { sTemp +=3D "IE6 " }=0A= if (browser_MZ7) { sTemp +=3D "MZ7 " }=0A= if (browser_NS3) { sTemp +=3D "NS3 " }=0A= if (browser_NS4) { sTemp +=3D "NS4 " }=0A= if (browser_NS6) { sTemp +=3D "NS6 " }=0A= if 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`1.`	`gi\|115459078 Mass: = ;36921 Score: 73 Expect:<= /B> 0.024 Queries=20 matched: 7`
	`Os04g0486600 [Oryza sativa (japonica=20 cultivar-group)]`

	`gi\|125548785 Mass: = ;42368 Score: 70 Expect:<= /B> 0.054 Queries=20 matched: 7`
	`hypothetical protein OsI_015840 [Oryza sativa (indica = cultivar-group)]`

	`gi\|149390629 Mass: = ;23785 Score: 67 &nbs= p; Expect: 0.1 Queries=20 matched: 6`
	`glyceraldehyde-3-phosphate dehydrogenase [Oryza = sativa=20 (indica cultivar-group)]`

	`gi\|149391151 Mass: = ;28468 Score: 45 &nbs= p; Expect: 16 Queries=20 matched: 5`
	`glyceraldehyde-3-phosphate dehydrogenase [Oryza = sativa=20 (indica cultivar-group)]`

	`gi\|145356082 Mass: = ;36385 Score: 40 &nbs= p; Expect: 47 Queries=20 matched: 4`
	`predicted protein [Ostreococcus lucimarinus=20 CCE9901]`

	`gi\|115447137 Mass: = ;36716 Score: 40 &nbs= p; Expect: 54 Queries=20 matched: 5`
	`Os02g0601300 [Oryza sativa (japonica=20 cultivar-group)]`

	`gi\|162462949 Mass: = ;36597 Score: 39 &nbs= p; Expect: 56 Queries=20 matched: 5`
	`cytosolic glyceroldehyde-3-phosphate dehydrogenase = GAPC3=20 [Zea mays]`

	`gi\|162458671 Mass: = ;36656 Score: 39 &nbs= p; Expect: 56 Queries=20 matched: 5`
	`cytosolic glyceroldehyde-3-phosphate dehydrogenase = GAPC4=20 [Zea mays]`

	`gi\|125540174 Mass: = ;39178 Score: 38 &nbs= p; Expect: 70 Queries=20 matched: 5`
	`hypothetical protein OsI_007802 [Oryza sativa (indica = cultivar-group)]`

	`gi\|158512931 Mass: = ;20455 Score: 37 &nbs= p; Expect: 94 Queries=20 matched: 3`
	`Late embryogenesis abundant protein, group 3=20 (LEA-3)`

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	Significance threshold p<	Max. number of hits

	`gi\|152940805 Mass: = ;20410 Score: 37 &nbs= p; Expect: 94 Queries=20 matched: 3`
	`putative group 3 LEA protein [Oryza sativa Japonica=20 Group]`

Mascot Search=20 Results

Probability Based Mowse Score

Concise Protein Summary Report

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