From: "Saved by Windows Internet Explorer 7" Subject: Concise Summary Report (../data/20080627/FtgefeYtt.dat) Date: Fri, 27 Jun 2008 13:59:22 -0400 MIME-Version: 1.0 Content-Type: multipart/related; type="text/html"; boundary="----=_NextPart_000_0000_01C8D85E.006F51C0" X-MimeOLE: Produced By Microsoft MimeOLE V6.0.6000.16545 This is a multi-part message in MIME format. ------=_NextPart_000_0000_01C8D85E.006F51C0 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: quoted-printable Content-Location: http://www.matrixscience.com/cgi/master_results.pl?file=../data/20080627/FtgefeYtt.dat =EF=BB=BF Concise Summary Report = (../data/20080627/FtgefeYtt.dat)

Mascot Search=20 Results

User    =
        : daishaojun
Email           : sdai@ufl.edu
Search title    : 
Database        : NCBInr 20080616 (6589360 sequences; 2253133281 =
residues)
Taxonomy        : Viridiplantae (Green Plants) (483498 sequences)
Timestamp       : 27 Jun 2008 at 17:57:36 GMT
Top Score       : 76 for gi|115482382, =
Os10g0462900 [Oryza sativa (japonica cultivar-group)]

Probability Based Mowse Score

Protein score is -10*Log(P), where = P is=20 the probability that the observed match is a random event.
Protein = scores=20 greater than 69 are significant (p<0.05).

3D"Score=20

=20

Concise Protein Summary Report

Help
  Significance threshold p< Max. number of hits
= =20 = =20 =20 =20 =20 = = =20

  =20

1.     gi|115482382    Mass: = ;61097    Score: 76     Expect:<= /B> 0.011  Queries=20 matched: 14
  Os10g0462900 [Oryza sativa (japonica=20 cultivar-group)]
       gi|125532254    Mass: = ;62053    Score: 75     Expect:<= /B> 0.015  Queries=20 matched: 14
  hypothetical protein OsI_032778 [Oryza sativa (indica = cultivar-group)]
       gi|110289207    Mass: = ;67551    Score: 74     Expect:<= /B> 0.018  Queries=20 matched: 14
  Chaperonin CPN60-1, mitochondrial precursor, = putative,=20 expressed [Oryza sativa (japonica=20 cultivar-group)]
       gi|125575057    Mass: = ;62022    Score: 54   &nbs= p; Expect: 2.1  Queries=20 matched: 12
  hypothetical protein OsJ_030550 [Oryza sativa = (japonica=20 cultivar-group)]
       gi|125542360    Mass: = ;77710    Score: 51   &nbs= p; Expect: 4.1  Queries=20 matched: 12
  hypothetical protein OsI_009732 [Oryza sativa (indica = cultivar-group)]
       gi|115435710    Mass: = ;11472    Score: 44   &nbs= p; Expect: 18  Queries=20 matched: 6
  Os01g0253600 [Oryza sativa (japonica=20 cultivar-group)]
       gi|125524295    Mass: = ;13350    Score: 44   &nbs= p; Expect: 22  Queries=20 matched: 6
  hypothetical protein OsI_000256 [Oryza sativa (indica = cultivar-group)]
       gi|125568907    Mass: = ;13362    Score: 44   &nbs= p; Expect: 22  Queries=20 matched: 6
  hypothetical protein OsJ_000247 [Oryza sativa = (japonica=20 cultivar-group)]
       gi|9759357    Mass: 8= 4749    Score: 43    =  Expect: 23  Queries=20 matched: 10
  unnamed protein product [Arabidopsis=20 thaliana]
       gi|115434352    Mass: = ;15904    Score: 40   &nbs= p; Expect: 44  Queries=20 matched: 6
  Os01g0132700 [Oryza sativa (japonica=20 cultivar-group)]
       gi|108708554    Mass: = ;15140    Score: 39   &nbs= p; Expect: 64  Queries=20 matched: 6
  expressed protein [Oryza sativa (japonica=20 cultivar-group)]
       gi|115450675    Mass: = ;61292    Score: 39   &nbs= p; Expect: 64  Queries=20 matched: 10
  Os03g0143400 [Oryza sativa (japonica=20 cultivar-group)]
       gi|110739162    Mass: = ;56268    Score: 39   &nbs= p; Expect: 65  Queries=20 matched: 8
  hypothetical protein [Arabidopsis=20 thaliana]
       gi|125584879    Mass: = ;65577    Score: 38   &nbs= p; Expect: 78  Queries=20 matched: 10
  hypothetical protein OsJ_009026 [Oryza sativa = (japonica=20 cultivar-group)]
       gi|12002417    Mass: = 60841    Score: 36    = ; Expect: 1.2e+02  Queries=20 matched: 8
  maturase K [Arabidopsis = thaliana]
       gi|126022795    Mass: = ;60841    Score: 36   &nbs= p; Expect: 1.3e+02  Queries=20 matched: 8
  maturase K [Arabidopsis = thaliana]
       gi|12002415    Mass: = 60825    Score: 36    = ; Expect: 1.3e+02  Queries=20 matched: 8
  maturase K [Arabidopsis = thaliana]
       gi|12002419    Mass: = 60807    Score: 36    = ; Expect: 1.3e+02  Queries=20 matched: 8
  maturase K [Arabidopsis = thaliana]
       gi|25518576    Mass: = 26441    Score: 35    = ; Expect: 1.6e+02  Queries=20 matched: 6
  hypothetical protein F4F7.5 [imported] - Arabidopsis=20 thaliana
       gi|168010488    Mass: = ;13765    Score: 35   &nbs= p; Expect: 1.6e+02  Queries=20 matched: 6
  predicted protein [Physcomitrella patens subsp.=20 patens]
       gi|5881675    Mass: 6= 3568    Score: 35    =  Expect: 1.6e+02  Queries=20 matched: 8
  matK [Arabidopsis = thaliana]
       gi|15221838    Mass: = 27788    Score: 34    = ; Expect: 1.8e+02  Queries=20 matched: 6
  unknown protein [Arabidopsis=20 thaliana]
       gi|125535615    Mass: = ;23159    Score: 33   &nbs= p; Expect: 2.4e+02  Queries=20 matched: 6
  hypothetical protein OsI_036062 [Oryza sativa (indica = cultivar-group)]
       gi|168034232    Mass: = ;57562    Score: 33   &nbs= p; Expect: 2.4e+02  Queries=20 matched: 8
  predicted protein [Physcomitrella patens subsp.=20 patens]
       gi|33327925    Mass: = 3859     Score: 33   =   Expect: 2.4e+02  Queries=20 matched: 4
  photosystem II subunit H [Aristolochia=20 macrophylla]
       gi|125578321    Mass: = ;22881    Score: 33   &nbs= p; Expect: 2.5e+02  Queries=20 matched: 6
  hypothetical protein OsJ_033676 [Oryza sativa = (japonica=20 cultivar-group)]
       gi|115487088    Mass: = ;23876    Score: 33   &nbs= p; Expect: 2.5e+02  Queries=20 matched: 6
  Os12g0123200 [Oryza sativa (japonica=20 cultivar-group)]
       gi|159479420    Mass: = ;26107    Score: 33   &nbs= p; Expect: 2.6e+02  Queries=20 matched: 6
  hypothetical protein CHLREDRAFT_150948 [Chlamydomonas = reinhardtii]
       gi|157350946    Mass: = ;4260     Score: 33   = ;  Expect: 2.6e+02  Queries=20 matched: 6
  unnamed protein product [Vitis=20 vinifera]
       gi|110629894    Mass: = ;23035    Score: 33   &nbs= p; Expect: 2.7e+02  Queries=20 matched: 6
  fruitful-like MADS-box transcription factor [Leersia=20 virginica]
       gi|168013528    Mass: = ;34846    Score: 32   &nbs= p; Expect: 2.8e+02  Queries=20 matched: 8
  predicted protein [Physcomitrella patens subsp.=20 patens]
       gi|167997978    Mass: = ;30514    Score: 32   &nbs= p; Expect: 2.8e+02  Queries=20 matched: 6
  predicted protein [Physcomitrella patens subsp.=20 patens]

2.     gi|15242093    Mass: = 57763    Score: 52    = ; Expect: 3.2  Queries=20 matched: 11
  chaperonin, putative [Arabidopsis=20 thaliana]
       gi|168039697    Mass: = ;30362    Score: 48   &nbs= p; Expect: 7.2  Queries=20 matched: 7
  predicted protein [Physcomitrella patens subsp.=20 patens]
       gi|42408852    Mass: = 10023    Score: 43    = ; Expect: 24  Queries=20 matched: 5
  hypothetical protein [Oryza sativa Japonica=20 Group]
       gi|125539610    Mass: = ;40246    Score: 36   &nbs= p; Expect: 1.3e+02  Queries=20 matched: 7
  hypothetical protein OsI_007238 [Oryza sativa (indica = cultivar-group)]
       gi|168039683    Mass: = ;28107    Score: 34   &nbs= p; Expect: 2.1e+02  Queries=20 matched: 5
  predicted protein [Physcomitrella patens subsp.=20 patens]
       gi|5852154    Mass: 2= 6858    Score: 32    =  Expect: 3e+02  Queries=20 matched: 5
  tyramine hydroxycinnamoyltransferase [Nicotiana=20 tabacum]

Search Parameters

Type of search         : Peptide Mass =
Fingerprint
Enzyme                 : Trypsin
Fixed modifications    : Carbamidomethyl (C)
Variable modifications : Oxidation (M)
Mass values            : Monoisotopic
Protein Mass           : Unrestricted
Peptide Mass Tolerance : =C2=B1 0.3 Da
Peptide Charge State   : 1+
Max Missed Cleavages   : 1
Number of queries      : 15

Mascot:  http://www.matrixscience.com/ =

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agt=3Dnavigator.userAgent.toLowerCase();=0A= =0A= if(typeof navigator.vendor !=3D "undefined" && navigator.vendor =3D=3D = "KDE"){=0A= var thisKDE =3D agt;=0A= var splitKDE =3D thisKDE.split("konqueror/");=0A= var aKDE =3D splitKDE[1] . split("; ");=0A= var KDEn =3D parseFloat(aKDE[0]);=0A= if (KDEn >=3D 2.2) {=0A= browser_KDE =3D 1;=0A= // browser_NS6 =3D 1;=0A= browser_EXCLUDE =3D 0;=0A= }=0A= }=0A= =0A= else if(agt.indexOf('webtv') !=3D -1){browser_EXCLUDE =3D 1;}=0A= =0A= else if(typeof window.opera !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= if(agt.indexOf("opera/5") !=3D -1 || agt.indexOf("opera 5") !=3D = -1){browser_OP5 =3D 1;}=0A= if(agt.indexOf("opera/6") !=3D -1 || agt.indexOf("opera 6") !=3D = -1){browser_OP6 =3D 1;}=0A= if(agt.indexOf("opera/7") !=3D -1 || agt.indexOf("opera 7") !=3D = -1){browser_OP7 =3D 1;}=0A= }=0A= =0A= else if(typeof document.all !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= browser_IE =3D 1;=0A= if(typeof document.getElementById !=3D "undefined"){=0A= browser_IE5 =3D 1;=0A= if(agt.indexOf("msie 6") !=3D -1){=0A= browser_IE6 =3D 1;=0A= }=0A= }=0A= else{browser_IE4 =3D 1;}=0A= }=0A= =0A= else if(typeof document.getElementById !=3D "undefined"){=0A= browser_EXCLUDE =3D 0;=0A= if(agt.indexOf("netscape/6") !=3D -1 || agt.indexOf("netscape6") !=3D = -1){browser_NS6 =3D 1;}=0A= else if(agt.indexOf("netscape/7") !=3D -1 || agt.indexOf("netscape7") = !=3D -1){browser_NS6 =3D 1; browser_NS7 =3D 1;}=0A= else if(agt.indexOf("gecko") !=3D -1){browser_NS6 =3D 1; browser_MZ7 = =3D 1;}=0A= if(agt.indexOf("safari") !=3D -1 || (typeof document.childNodes !=3D = "undefined" && typeof document.all =3D=3D "undefined" && typeof = navigator.taintEnabled =3D=3D "undefined")){browser_MZ7 =3D 0; = browser_NS6 =3D 1; browser_SAF =3D 1;}=0A= }=0A= =0A= else if((agt.indexOf('mozilla') !=3D -1) && = (parseInt(navigator.appVersion) >=3D 3)){=0A= browser_EXCLUDE =3D 0;=0A= if (parseInt(navigator.appVersion) >=3D 4) {=0A= browser_NS4 =3D 1;=0A= } else {=0A= browser_NS3 =3D 1;=0A= }=0A= if(typeof navigator.mimeTypes['*'] =3D=3D "undefined"){=0A= browser_EXCLUDE =3D 1;=0A= browser_NS4 =3D 0;=0A= browser_NS3 =3D 0;=0A= }=0A= }=0A= =0A= if(agt.indexOf('escape') !=3D -1){browser_EXCLUDE =3D 1; browser_NS3 = =3D 0; browser_NS4 =3D 0;}=0A= =0A= if(typeof navigator.__ice_version !=3D "undefined"){browser_EXCLUDE = =3D 1; browser_IE4 =3D 0;}=0A= =0A= var sTemp =3D "Browser detected as ";=0A= if (browser_EXCLUDE) { sTemp +=3D "EXCLUDE " }=0A= if (browser_IE) { sTemp +=3D "IE " }=0A= if (browser_IE4) { sTemp +=3D "IE4 " }=0A= if (browser_IE5) { sTemp +=3D "IE5 " }=0A= if (browser_IE6) { sTemp +=3D "IE6 " }=0A= if (browser_MZ7) { sTemp +=3D "MZ7 " }=0A= if (browser_NS3) { sTemp +=3D "NS3 " }=0A= if (browser_NS4) { sTemp +=3D "NS4 " }=0A= if (browser_NS6) { sTemp +=3D "NS6 " }=0A= if (browser_NS7) { sTemp +=3D "NS7 " }=0A= if (browser_OP5) { sTemp +=3D "OP5 " }=0A= if (browser_OP6) { sTemp +=3D "OP6 " }=0A= if (browser_OP7) { sTemp +=3D "OP7 " }=0A= if (browser_KDE) { sTemp +=3D "KDE " }=0A= if (browser_SAF) { sTemp +=3D "SAF " }=0A= // alert(sTemp);=0A= ------=_NextPart_000_0000_01C8D85E.006F51C0--